PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g29590
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family WRKY
Protein Properties Length: 311aa    MW: 34839.8 Da    PI: 8.1195
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g29590genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.66.8e-30177235158
                ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                ++Dgy+WrKYGqK+ ++++ pr+Y+rC++a +Cpvkkkv+rsaedp v++ tYeg+Hnh
  Tp7g29590 177 VKDGYQWRKYGQKVTRDNPSPRAYFRCSFApSCPVKKKVQRSAEDPAVLVATYEGTHNH 235
                58***************************99**************************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-28170236IPR003657WRKY domain
SuperFamilySSF1182908.5E-25174236IPR003657WRKY domain
SMARTSM007749.9E-34177237IPR003657WRKY domain
PfamPF031062.5E-24178235IPR003657WRKY domain
PROSITE profilePS5081125.958179238IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0050691Biological Processregulation of defense response to virus by host
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MDCSSFLDIS LDLNTNPFDR NFPAKLPKKE VKVSTSADLK WLVKDESASE LREELNRVNS  60
ENKKLTEMLA TVYENYNALH HHLEKLQSRK SSEIDQIEQP KKKQKQEPDE FLAFPNGLSS  120
GKTENSSSNE DHHHYQQQHE QKNHLLSYKR PVTDSFNKAK VSTVYVPADS SDTSLTVKDG  180
YQWRKYGQKV TRDNPSPRAY FRCSFAPSCP VKKKVQRSAE DPAVLVATYE GTHNHLGPNA  240
SEGDATSQGG SSTVTLDLVH GGHRLALEKN ERGTMQEVLV QQMASSLTKD SKFTAALAAA  300
ISGKLMEQSR T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-201792351974Probable WRKY transcription factor 4
2lex_A6e-201792351974Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00465DAPTransfer from AT4G31800Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300370.0KF430037.1 Brassica rapa WRKY transcription factor 18 (WRKY18) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013670740.10.0PREDICTED: WRKY transcription factor 18-like
SwissprotQ9C5T40.0WRK18_ARATH; WRKY transcription factor 18
TrEMBLA0A0D3A2S10.0A0A0D3A2S1_BRAOL; Uncharacterized protein
STRINGBra011299.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65841945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.11e-175WRKY DNA-binding protein 18